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r467: added : (equal length) and ^ (intron) ops

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Heng Li
2017-10-04 21:55:37 -04:00
parent 7d50e646dd
commit 9aba11769c
3 changed files with 19 additions and 8 deletions
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minimap.h
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@@ -16,6 +16,7 @@
#define MM_F_SPLICE_FOR 0x100 // match GT-AG
#define MM_F_SPLICE_REV 0x200 // match CT-AC, the reverse complement of GT-AG
#define MM_F_NO_LJOIN 0x400
#define MM_F_CS_NO_EQUAL 0x800
#define MM_F_SR 0x1000
#define MM_F_MULTI_SEG 0x2000
#define MM_F_NO_PRINT_2ND 0x4000