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r477: renamed multi_seg to frag_mode

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Heng Li
2017-10-05 15:48:17 -04:00
parent ae2adf04d4
commit 9c5767f9ed
5 changed files with 25 additions and 24 deletions
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minimap.h
+2 -2
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@@ -18,7 +18,7 @@
#define MM_F_NO_LJOIN 0x400
#define MM_F_OUT_CS_LONG 0x800
#define MM_F_SR 0x1000
#define MM_F_MULTI_SEG 0x2000
#define MM_F_FRAG_MODE 0x2000
#define MM_F_NO_PRINT_2ND 0x4000
#define MM_IDX_MAGIC "MMI\2"
@@ -258,7 +258,7 @@ mm_reg1_t *mm_map(const mm_idx_t *mi, int l_seq, const char *seq, int *n_regs, m
*/
int mm_map_file(const mm_idx_t *idx, const char *fn, const mm_mapopt_t *opt, int n_threads);
int mm_map_file_multi_seg(const mm_idx_t *idx, int n_segs, const char **fn, const mm_mapopt_t *opt, int n_threads);
int mm_map_file_frag(const mm_idx_t *idx, int n_segs, const char **fn, const mm_mapopt_t *opt, int n_threads);
// deprecated APIs for backward compatibility
void mm_mapopt_init(mm_mapopt_t *opt);