r972: renamed --alt-diff to --alt-drop

2026-10-05 12:38:51 +08:00 · 2020-01-21 10:33:39 -05:00
parent 20a3987082
commit 9dceae59a0
5 changed files with 15 additions and 10 deletions
@@ -129,7 +129,7 @@ typedef struct {
 	int min_join_flank_sc;
 	float min_join_flank_ratio;

-	float alt_diff_frac;
+	float alt_drop;

 	int a, b, q, e, q2, e2; // matching score, mismatch, gap-open and gap-ext penalties
 	int sc_ambi; // score when one or both bases are "N"