r972: renamed --alt-diff to --alt-drop

2026-10-04 00:08:11 +08:00 · 2020-01-21 10:33:39 -05:00
parent 20a3987082
commit 9dceae59a0
5 changed files with 15 additions and 10 deletions
@@ -124,6 +124,11 @@ will be effectively overridden by the options stored in the index file.
 .TP
 .BI --alt \ FILE
 List of ALT contigs [null]
+.TP
+.BI --alt-drop \ FLOAT
+Drop ALT hits by
+.I FLOAT
+fraction when ranking and computing mapping quality [0.15]
 .SS Mapping options
 .TP 10
 .BI -f \ FLOAT | INT1 [, INT2 ]