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r972: renamed --alt-diff to --alt-drop

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Heng Li
2020-01-21 10:33:39 -05:00
parent 20a3987082
commit 9dceae59a0
5 changed files with 15 additions and 10 deletions
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python/cmappy.pxd
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@@ -27,7 +27,7 @@ cdef extern from "minimap.h":
int max_join_long, max_join_short
int min_join_flank_sc
float min_join_flank_ratio
float alt_diff_frac
float alt_drop
int a, b, q, e, q2, e2
int sc_ambi
int noncan