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r1163: increased the default -I to 8G

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To reduce accidental errors when mapping against diploid human assemblies.
This commit is contained in:
Heng Li
2023-04-07 01:22:22 -04:00
parent ea2042a577
commit a026c69b89
4 changed files with 4 additions and 4 deletions
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main.c
+1 -1
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@@ -325,7 +325,7 @@ int main(int argc, char *argv[])
fprintf(fp_help, " -k INT k-mer size (no larger than 28) [%d]\n", ipt.k);
fprintf(fp_help, " -w INT minimizer window size [%d]\n", ipt.w);
// fprintf(fp_help, " -j INT syncmer submer size (overriding -w) []\n");
fprintf(fp_help, " -I NUM split index for every ~NUM input bases [4G]\n");
fprintf(fp_help, " -I NUM split index for every ~NUM input bases [8G]\n");
fprintf(fp_help, " -d FILE dump index to FILE []\n");
fprintf(fp_help, " Mapping:\n");
fprintf(fp_help, " -f FLOAT filter out top FLOAT fraction of repetitive minimizers [%g]\n", opt.mid_occ_frac);