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Merge remote-tracking branch 'origin/master'

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Heng Li
2024-03-10 13:49:30 -04:00
parent 8140259974 f3e59fc2a0
commit a12673611f
2 changed files with 2 additions and 1 deletions
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index.c
+1
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@@ -192,6 +192,7 @@ int32_t mm_idx_cal_max_occ(const mm_idx_t *mi, float f)
if (f <= 0.) return INT32_MAX; if (f <= 0.) return INT32_MAX;
for (i = 0; i < 1<<mi->b; ++i) for (i = 0; i < 1<<mi->b; ++i)
if (mi->B[i].h) n += kh_size((idxhash_t*)mi->B[i].h); if (mi->B[i].h) n += kh_size((idxhash_t*)mi->B[i].h);
if (n == 0) return INT32_MAX;
a = (uint32_t*)malloc(n * 4); a = (uint32_t*)malloc(n * 4);
for (i = n = 0; i < 1<<mi->b; ++i) { for (i = n = 0; i < 1<<mi->b; ++i) {
idxhash_t *h = (idxhash_t*)mi->B[i].h; idxhash_t *h = (idxhash_t*)mi->B[i].h;
misc/paftools.js
+1 -1
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@@ -2076,7 +2076,7 @@ function paf_mapeval(args)
warn("Usage: paftools.js mapeval [options] <in.paf>|<in.sam>"); warn("Usage: paftools.js mapeval [options] <in.paf>|<in.sam>");
warn("Options:"); warn("Options:");
warn(" -r FLOAT mapping correct if overlap_length/union_length>FLOAT [" + ovlp_ratio + "]"); warn(" -r FLOAT mapping correct if overlap_length/union_length>FLOAT [" + ovlp_ratio + "]");
warn(" -Q INT print wrong mappings with mapQ>INT [don't print]"); warn(" -Q INT print wrong mappings with mapQ>=INT [don't print]");
warn(" -m INT 0: eval the longest aln only; 1: first aln only; 2: all primary aln [0]"); warn(" -m INT 0: eval the longest aln only; 1: first aln only; 2: all primary aln [0]");
exit(1); exit(1);
} }