use -msse4 by default, not -march

This commit is contained in:
Heng Li
2017-07-18 13:56:51 -04:00
parent b4edb0cf55
commit a1addb2949
2 changed files with 14 additions and 1 deletions
+9
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@@ -31,6 +31,15 @@ and [longISLND][longislnd]), better chaining and the ability to produce CIGAR
with fast extension alignment (see also [libgaba][gaba] and [ksw2][ksw2]) and
piece-wise affine gap cost.
## Installation
For modern x86-64 CPUs, just type `make` in the source code directory. This
will compile a binary `minimap2` which you can copy to your desired location.
If you see compilation errors, try `make sse2only=1` to disable SSE4. Minimap2
will run a little slower. At present, minimap2 does not work with non-x86 CPUs
or ancient CPUs that do not support SSE2. SSE2 is critical to the performance
of minimap2.
## Limitations
* At the alignment phase, minimap2 performs global alignments between minimizer