fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-07 11:18:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

r444: changed the way orientation is specified

Browse Source 
The old model doesn't work with RF or RR orientation. The new model only works
with paired-end reads. For >2 segments, only FF is supported.
This commit is contained in:
Heng Li
2017-09-27 12:33:10 -04:00
parent f611edf6f2
commit a349d85280
4 changed files with 39 additions and 13 deletions
Download Patch File Download Diff File Expand all files Collapse all files
minimap.h
+1 -1
View File
@@ -18,7 +18,6 @@
#define MM_F_NO_SAM_SQ 0x800
#define MM_F_SR 0x1000
#define MM_F_MULTI_SEG 0x2000
#define MM_F_SEG_REV 0x4000
#define MM_IDX_MAGIC "MMI\2"
@@ -82,6 +81,7 @@ typedef struct {
typedef struct {
int sdust_thres; // score threshold for SDUST; 0 to disable
int flag; // see MM_F_* macros
int pe_ori;
int bw; // bandwidth
int max_gap, max_gap_ref; // break a chain if there are no minimizers in a max_gap window