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r1269: added --write-junc

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in preparation for 2-pass
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Heng Li
2025-04-11 01:00:15 -04:00
parent bd03d975fc
commit a5411fc3c0
5 changed files with 59 additions and 2 deletions
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minimap.h
+2 -1
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@@ -5,7 +5,7 @@
#include <stdio.h>
#include <sys/types.h>
#define MM_VERSION "2.28-r1268-dirty"
#define MM_VERSION "2.28-r1269-dirty"
#define MM_F_NO_DIAG (0x001LL) // no exact diagonal hit
#define MM_F_NO_DUAL (0x002LL) // skip pairs where query name is lexicographically larger than target name
@@ -47,6 +47,7 @@
#define MM_F_OUT_DS (0x2000000000LL)
#define MM_F_WEAK_PAIRING (0x4000000000LL)
#define MM_F_SR_RNA (0x8000000000LL)
#define MM_F_OUT_JUNC (0x10000000000LL)
#define MM_I_HPC 0x1
#define MM_I_NO_SEQ 0x2