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Release minimap2-2.12 (r827)

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Heng Li
2018-08-06 12:44:39 -04:00
parent 9a567e4b37
commit a5eafb75f9
6 changed files with 35 additions and 11 deletions
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cookbook.md
+6 -6
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@@ -24,18 +24,18 @@
This cookbook walks you through a variety of applications of minimap2 and its
companion script `paftools.js`. All data here are freely available from the
minimap2 release page at version tag [v2.11][v2.11]. Some examples only work
with v2.11 or later.
minimap2 release page at version tag [v2.12][v2.12]. Some examples only work
with v2.10 or later.
To acquire the data used in this cookbook and to install minimap2 and paftools,
please follow the command lines below:
```sh
# install minimap2 executables
curl -L https://github.com/lh3/minimap2/releases/download/v2.11/minimap2-2.11_x64-linux.tar.bz2 | tar jxf -
cp minimap2-2.11_x64-linux/{minimap2,k8,paftools.js} . # copy executables
curl -L https://github.com/lh3/minimap2/releases/download/v2.12/minimap2-2.12_x64-linux.tar.bz2 | tar jxf -
cp minimap2-2.12_x64-linux/{minimap2,k8,paftools.js} . # copy executables
export PATH="$PATH:"`pwd` # put the current directory on PATH
# download example datasets
curl -L https://github.com/lh3/minimap2/releases/download/v2.11/cookbook-data.tgz | tar zxf -
curl -L https://github.com/lh3/minimap2/releases/download/v2.10/cookbook-data.tgz | tar zxf -
```
## <a name="map-reads"></a>Mapping Genomic Reads
@@ -240,4 +240,4 @@ with `-x ava-pb` (99% vs 93% with `-x ava-ont`).
[pbsim]: https://github.com/pfaucon/PBSIM-PacBio-Simulator
[mason2]: https://github.com/seqan/seqan/tree/master/apps/mason2
[paf]: https://github.com/lh3/miniasm/blob/master/PAF.md
[v2.11]: https://github.com/lh3/minimap2/releases/tag/v2.11
[v2.12]: https://github.com/lh3/minimap2/releases/tag/v2.12