optionally output unmapped query in PAF

2026-10-04 11:48:12 +08:00 · 2018-07-07 10:26:08 -05:00
parent bcf92b3c46
commit a609a07f8c
4 changed files with 16 additions and 0 deletions
@@ -32,6 +32,7 @@
 #define MM_F_OUT_MD        0x1000000
 #define MM_F_COPY_COMMENT  0x2000000
 #define MM_F_EQX           0x4000000 // use =/X instead of M
+#define MM_F_PAF_NO_HIT    0x8000000 // output unmapped reads to PAF

 #define MM_I_HPC          0x1
 #define MM_I_NO_SEQ       0x2