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print SAM header; remove tmp files

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Heng Li
2018-07-15 11:03:18 -04:00
parent 4b707aac92
commit a655cbef86
4 changed files with 20 additions and 4 deletions
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main.c
+1 -1
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@@ -329,7 +329,7 @@ int main(int argc, char *argv[])
mm_write_sam_hdr(mi, rg, MM_VERSION, argc, argv);
} else {
mm_write_sam_hdr(0, rg, MM_VERSION, argc, argv);
if (mm_verbose >= 2)
if (opt.split_prefix == 0 && mm_verbose >= 2)
fprintf(stderr, "[WARNING]\033[1;31m For a multi-part index, no @SQ lines will be outputted.\033[0m\n");
}
}