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print SAM header; remove tmp files

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This commit is contained in:
Heng Li
2018-07-15 11:03:18 -04:00
parent 4b707aac92
commit a655cbef86
4 changed files with 20 additions and 4 deletions
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splitidx.c
+14 -2
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@@ -33,7 +33,7 @@ mm_idx_t *mm_split_merge_prep(const char *prefix, int n_splits, FILE **fp, uint3
int i, j;
if (n_splits < 1) return 0;
fn = (char*)calloc(strlen(prefix) + 10, 1);
fn = CALLOC(char, strlen(prefix) + 10);
for (i = 0; i < n_splits; ++i) {
sprintf(fn, "%s.%.4d.tmp", prefix, i);
if ((fp[i] = fopen(fn, "rb")) == 0) {
@@ -47,7 +47,7 @@ mm_idx_t *mm_split_merge_prep(const char *prefix, int n_splits, FILE **fp, uint3
}
free(fn);
mi = (mm_idx_t*)calloc(1, sizeof(mm_idx_t));
mi = CALLOC(mm_idx_t, 1);
for (i = 0; i < n_splits; ++i) {
mm_err_fread(&mi->k, 4, 1, fp[i]); // TODO: check if k is all the same
mm_err_fread(&n_seq_part[i], 4, 1, fp[i]);
@@ -66,3 +66,15 @@ mm_idx_t *mm_split_merge_prep(const char *prefix, int n_splits, FILE **fp, uint3
}
return mi;
}
void mm_split_rm_tmp(const char *prefix, int n_splits)
{
int i;
char *fn;
fn = CALLOC(char, strlen(prefix) + 10);
for (i = 0; i < n_splits; ++i) {
sprintf(fn, "%s.%.4d.tmp", prefix, i);
remove(fn);
}
free(fn);
}