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r1256: working for one example, but still buggy

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Heng Li
2025-04-06 10:33:57 -04:00
parent 1877818239
commit a8094ad859
6 changed files with 37 additions and 13 deletions
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map.c
+4
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@@ -359,6 +359,10 @@ void mm_map_frag_core(const mm_idx_t *mi, int n_segs, const int *qlens, const ch
kfree(b->km, u);
kfree(b->km, mini_pos);
if (mi->J && n_segs == 1 && is_splice)
for (i = 0; i < n_regs0; ++i)
mm_jump_split(b->km, mi, opt, qlens[0], (const uint8_t*)seqs[0], &regs0[i], 0);
if (b->km) {
km_stat(b->km, &kmst);
if (mm_dbg_flag & MM_DBG_PRINT_QNAME)