From a83b8fe7cc09b5c5c74b5684cabd879c864d6fe1 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Tue, 19 Mar 2024 21:53:09 -0400 Subject: [PATCH] r1201: renamed --dbg-seed-freq to --dbg-seed-occ --- main.c | 4 ++-- minimap.h | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/main.c b/main.c index 5b6aacc..2fbfce1 100644 --- a/main.c +++ b/main.c @@ -79,7 +79,7 @@ static ko_longopt_t long_options[] = { { "secondary-seq", ko_no_argument, 354 }, { "ds", ko_no_argument, 355 }, { "rmq-inner", ko_required_argument, 356 }, - { "dbg-seed-freq", ko_no_argument, 501 }, + { "dbg-seed-occ", ko_no_argument, 501 }, { "help", ko_no_argument, 'h' }, { "max-intron-len", ko_required_argument, 'G' }, { "version", ko_no_argument, 'V' }, @@ -248,7 +248,7 @@ int main(int argc, char *argv[]) else if (c == 354) opt.flag |= MM_F_SECONDARY_SEQ; // --secondary-seq else if (c == 355) opt.flag |= MM_F_OUT_DS; // --ds else if (c == 356) opt.rmq_inner_dist = mm_parse_num(o.arg); // --rmq-inner - else if (c == 501) mm_dbg_flag |= MM_DBG_SEED_FREQ; // --dbg-seed-freq + else if (c == 501) mm_dbg_flag |= MM_DBG_SEED_FREQ; // --dbg-seed-occ else if (c == 330) { fprintf(stderr, "[WARNING] \033[1;31m --lj-min-ratio has been deprecated.\033[0m\n"); } else if (c == 314) { // --frag diff --git a/minimap.h b/minimap.h index 884d42d..91f664a 100644 --- a/minimap.h +++ b/minimap.h @@ -5,7 +5,7 @@ #include #include -#define MM_VERSION "2.27-r1200-dirty" +#define MM_VERSION "2.27-r1201-dirty" #define MM_F_NO_DIAG (0x001LL) // no exact diagonal hit #define MM_F_NO_DUAL (0x002LL) // skip pairs where query name is lexicographically larger than target name