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r1251: read junctions for jumps

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Heng Li
2025-04-04 16:23:19 -04:00
parent d9d3c0cc3f
commit a8c567b5e9
3 changed files with 50 additions and 6 deletions
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minimap.h
+2 -1
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@@ -5,7 +5,7 @@
#include <stdio.h>
#include <sys/types.h>
#define MM_VERSION "2.28-r1249-dirty"
#define MM_VERSION "2.28-r1251-dirty"
#define MM_F_NO_DIAG (0x001LL) // no exact diagonal hit
#define MM_F_NO_DUAL (0x002LL) // skip pairs where query name is lexicographically larger than target name
@@ -93,6 +93,7 @@ typedef struct {
struct mm_idx_bucket_s *B; // index (hidden)
struct mm_idx_intv_s *I; // intervals (hidden)
struct mm_idx_spsc_s *spsc;// splice score (hidden)
struct mm_idx_jjump_s *J; // junctions to create jumps (hidden)
void *km, *h;
} mm_idx_t;