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Heng Li
2017-06-24 22:51:31 -04:00
parent d08b58d21f
commit aa5881e7bb
4 changed files with 43 additions and 13 deletions
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map.c
+1 -11
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@@ -168,18 +168,8 @@ mm_reg1_t *mm_gen_reg(int qlen, int n_u, uint64_t *u, mm128_t *a)
ri->parent = -1, ri->subsc = 0;
ri->score = u[i]>>32;
ri->cnt = (int32_t)u[i];
ri->rev = a[k].x>>63;
ri->rid = a[k].x<<1>>33;
ri->rs = (int32_t)a[k].x + 1 > (int32_t)(a[k].y>>32)? (int32_t)a[k].x + 1 - (int32_t)(a[k].y>>32) : 0;
ri->re = (int32_t)a[k + ri->cnt - 1].x + 1;
if (!ri->rev) {
ri->qs = (int32_t)a[k].y + 1 - (int32_t)(a[k].y>>32);
ri->qe = (int32_t)a[k + ri->cnt - 1].y + 1;
} else {
ri->qs = qlen - ((int32_t)a[k + ri->cnt - 1].y + 1);
ri->qe = qlen - ((int32_t)a[k].y + 1 - (int32_t)(a[k].y>>32));
}
ri->as = k;
mm_reg_set_coor(ri, qlen, a);
k += ri->cnt;
}
return r;