fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-09-28 09:08:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

r626: function to check incorrect scoring system

Browse Source
This commit is contained in:
Heng Li
2017-12-13 12:23:43 -05:00
parent d003a00d71
commit ab345e600b
3 changed files with 19 additions and 1 deletions
Download Patch File Download Diff File Expand all files Collapse all files
map.c
+15
View File
@@ -115,6 +115,21 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
return 0;
}
int mm_check_opt(const mm_idxopt_t *io, const mm_mapopt_t *mo)
{
if (mo->a + 2 * (mo->q + mo->e) > 127 || mo->a + 2 * (mo->q2 + mo->e2) > 127) {
if (mm_verbose >= 1)
fprintf(stderr, "[ERROR]\033[1;31m scoring system violating {-A}+2*({-O}+{-E}) <= 127\033[0m\n");
return -1;
}
if ((mo->q != mo->q2 || mo->e != mo->e2) && !(mo->e > mo->e2 && mo->q + mo->e < mo->q2 + mo->e2)) {
if (mm_verbose >= 1)
fprintf(stderr, "[ERROR]\033[1;31m dual gap penalties violating E1>E2 and O1+E1<O2+E2\033[0m\n");
return -2;
}
return 0;
}
typedef struct {
uint32_t n;
uint32_t qpos;