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r1035: failed to index under the --frag=yes mode

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Resolves #734
This commit is contained in:
Heng Li
2021-05-10 12:36:48 -04:00
parent f7dc5799c5
commit ac146fe7bc
1 changed files with 2 additions and 1 deletions
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3
main.c
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@@ -7,7 +7,7 @@
#include "mmpriv.h" #include "mmpriv.h"
#include "ketopt.h" #include "ketopt.h"
#define MM_VERSION "2.18-r1028-dirty" #define MM_VERSION "2.18-r1035-dirty"
#ifdef __linux__ #ifdef __linux__
#include <sys/resource.h> #include <sys/resource.h>
@@ -393,6 +393,7 @@ int main(int argc, char *argv[])
if (mm_verbose >= 3) mm_idx_stat(mi); if (mm_verbose >= 3) mm_idx_stat(mi);
if (junc_bed) mm_idx_bed_read(mi, junc_bed, 1); if (junc_bed) mm_idx_bed_read(mi, junc_bed, 1);
if (alt_list) mm_idx_alt_read(mi, alt_list); if (alt_list) mm_idx_alt_read(mi, alt_list);
if (argc - (o.ind + 1) == 0) continue; // no query files
ret = 0; ret = 0;
if (!(opt.flag & MM_F_FRAG_MODE)) { if (!(opt.flag & MM_F_FRAG_MODE)) {
for (i = o.ind + 1; i < argc; ++i) { for (i = o.ind + 1; i < argc; ++i) {