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r476: multi-file fragment mode working

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Heng Li
2017-10-05 15:39:26 -04:00
parent b839758335
commit ae2adf04d4
4 changed files with 12 additions and 6 deletions
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minimap.h
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@@ -258,6 +258,8 @@ mm_reg1_t *mm_map(const mm_idx_t *mi, int l_seq, const char *seq, int *n_regs, m
*/
int mm_map_file(const mm_idx_t *idx, const char *fn, const mm_mapopt_t *opt, int n_threads);
int mm_map_file_multi_seg(const mm_idx_t *idx, int n_segs, const char **fn, const mm_mapopt_t *opt, int n_threads);
// deprecated APIs for backward compatibility
void mm_mapopt_init(mm_mapopt_t *opt);
mm_idx_t *mm_idx_build(const char *fn, int w, int k, int is_hpc, int n_threads);