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added --chain-skip-scale

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Heng Li
2021-10-01 16:58:03 -04:00
parent 7ee62dae1d
commit aefa2c0d86
5 changed files with 12 additions and 4 deletions
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python/cmappy.pxd
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@@ -23,6 +23,7 @@ cdef extern from "minimap.h":
int min_cnt
int min_chain_score
float chain_gap_scale
float chain_skip_scale
int rmq_size_cap, rmq_inner_dist
int rmq_rescue_size
float rmq_rescue_ratio