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r823: mappy to index a single sequence

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Heng Li
2018-08-05 20:57:05 -04:00
parent 5ab6538757
commit b0f39a1a61
5 changed files with 37 additions and 10 deletions
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python/cmappy.h
+12
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@@ -137,4 +137,16 @@ static char *mappy_fetch_seq(const mm_idx_t *mi, const char *name, int st, int e
return s;
}
static mm_idx_t *mappy_idx_seq(int w, int k, int is_hpc, int bucket_bits, const char *seq, int len)
{
const char *fake_name = "N/A";
char *s;
mm_idx_t *mi;
s = (char*)calloc(len + 1, 1);
memcpy(s, seq, len);
mi = mm_idx_str(w, k, is_hpc, bucket_bits, 1, (const char**)&s, (const char**)&fake_name);
free(s);
return mi;
}
#endif