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sam output

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Heng Li
2017-06-25 22:05:20 -04:00
parent 39083be9ab
commit b1077ff14c
5 changed files with 71 additions and 8 deletions
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minimap.h
+4 -2
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@@ -7,8 +7,9 @@
#define MM_IDX_DEF_B 14
#define MM_F_NO_SELF 0x2
#define MM_F_AVA 0x8
#define MM_F_NO_SELF 0x01
#define MM_F_AVA 0x02
#define MM_F_OUT_SAM 0x04
#define MM_IDX_MAGIC "MMI\2"
@@ -57,6 +58,7 @@ typedef struct {
int32_t qs, qe, rs, re;
int32_t parent, subsc;
int32_t as;
int32_t mapq, n_sub; // TODO: n_sub is not used for now
mm_extra_t *p;
} mm_reg1_t;