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improvement to the python binding

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Heng Li
2017-09-16 11:14:01 -04:00
parent 7e34bea7ab
commit b22703a354
3 changed files with 92 additions and 68 deletions
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python/cminimap2.pxd
+8 -7
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@@ -79,12 +79,13 @@ cdef extern from "minimap.h":
#
cdef extern from "cminimap2.h":
ctypedef struct mm_hitpy_t:
const char *ctg
int32_t ctg_start, ctg_end
int32_t qry_start, qry_end
int32_t n_cigar32
uint8_t strand, mapq, is_primary
uint32_t *cigar32
const char *ctg;
int32_t ctg_start, ctg_end;
int32_t qry_start, qry_end;
int32_t blen, NM, ctg_len;
uint8_t strand, mapq, is_primary, trans_strand;
int32_t n_cigar32;
uint32_t *cigar32;
mm_hitpy_t *mm_reg2hitpy(const mm_idx_t *mi, int n_regs, mm_reg1_t *regs)
void mm_reg2hitpy(const mm_idx_t *mi, mm_reg1_t *r, mm_hitpy_t *h)
void mm_free_reg1(mm_reg1_t *r)