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r557: fixed another mapq underestimate

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When a chain is split during base-level alignment, its chaining score is
reduced. However, the chaining score of its suboptimal chain remains the same.
This leads to underestimated mapping quality.
This commit is contained in:
Heng Li
2017-11-07 23:20:49 -05:00
parent 65deedfa96
commit b24d68ae9f
4 changed files with 7 additions and 9 deletions
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main.c
+1 -1
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@@ -6,7 +6,7 @@
#include "mmpriv.h"
#include "getopt.h"
#define MM_VERSION "2.4-r556-dirty"
#define MM_VERSION "2.4-r557-dirty"
#ifdef __linux__
#include <sys/resource.h>