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r176: removed seedcov_ratio; changed default opt

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min_seedcov_ratio is not used
This commit is contained in:
Heng Li
2017-07-12 12:47:46 -04:00
parent 52caf79395
commit b4280d186f
5 changed files with 26 additions and 29 deletions
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hit.c
-4
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@@ -197,10 +197,6 @@ void mm_filter_regs(void *km, const mm_mapopt_t *opt, int *n_regs, mm_reg1_t *re
mm_reg1_t *r = &regs[i];
int flt = 0;
if (r->cnt < opt->min_cnt) flt = 1;
else {
int blen = r->qe - r->qs < r->re - r->rs? r->qe - r->qs : r->re - r->rs;
if (r->score < blen * opt->min_seedcov_ratio * opt->a) flt = 1;
}
if (r->p) {
if (r->p->blen - r->p->n_ambi - r->p->n_diff < opt->min_chain_score) flt = 1;
else if (r->p->dp_max < opt->min_dp_max) flt = 1;