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mappy to support BED

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Heng Li
2018-09-17 14:54:44 -04:00
parent a3e223f17b
commit b4b70db126
6 changed files with 63 additions and 10 deletions
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main.c
+1 -1
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@@ -344,7 +344,7 @@ int main(int argc, char *argv[])
fprintf(stderr, "[M::%s::%.3f*%.2f] loaded/built the index for %d target sequence(s)\n",
__func__, realtime() - mm_realtime0, cputime() / (realtime() - mm_realtime0), mi->n_seq);
if (argc != o.ind + 1) mm_mapopt_update(&opt, mi);
if (fn_bed) mm_idx_read_bed(mi, fn_bed);
if (fn_bed) mm_idx_bed_read(mi, fn_bed);
if (mm_verbose >= 3) mm_idx_stat(mi);
if (!(opt.flag & MM_F_FRAG_MODE)) {
for (i = o.ind + 1; i < argc; ++i)