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mappy to support BED

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Heng Li
2018-09-17 14:54:44 -04:00
parent a3e223f17b
commit b4b70db126
6 changed files with 63 additions and 10 deletions
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python/cmappy.pxd
+8
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@@ -117,6 +117,14 @@ cdef extern from "cmappy.h":
char *mappy_fetch_seq(const mm_idx_t *mi, const char *name, int st, int en, int *l)
mm_idx_t *mappy_idx_seq(int w, int k, int is_hpc, int bucket_bits, const char *seq, int l)
ctypedef struct mm_bedpy_t:
int32_t n, m
mm_idx_bed_t *r
mm_bedpy_t *mappy_bed_new()
int mappy_bed_add(mm_bedpy_t *bed, mm_idx_t *mi, const char *name, uint32_t st, uint32_t en)
void mappy_bed_finalize(mm_bedpy_t *bed, mm_idx_t *mi)
ctypedef struct kstring_t:
unsigned l, m
char *s