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## Getting Started
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## Getting Started
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```sh
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```sh
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git clone https://gitlab.com/lh3/minimap2
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git clone https://github.com/lh3/minimap2
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cd minimap2 && make
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cd minimap2 && make
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# long reads against a reference genome
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# long reads against a reference genome
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./minimap2 -ax map10k test/MT-human.fa test/MT-orang.fa > test.sam
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./minimap2 -ax map10k test/MT-human.fa test/MT-orang.fa > test.sam
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