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r296: expose splicing related options to CLI

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Heng Li
2017-08-13 21:37:51 -04:00
parent 28f86688ab
commit b5f5929bf9
4 changed files with 54 additions and 28 deletions
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minimap.h
+11 -9
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@@ -5,16 +5,18 @@
#include <stdio.h>
#include <sys/types.h>
#define MM_IDX_DEF_B 14
#define MM_IDX_DEF_B 14
#define MM_F_NO_SELF 0x01
#define MM_F_AVA 0x02
#define MM_F_CIGAR 0x04
#define MM_F_OUT_SAM 0x08
#define MM_F_NO_QUAL 0x10
#define MM_F_OUT_CG 0x20
#define MM_F_OUT_CS 0x40
#define MM_F_SPLICE 0x80
#define MM_F_NO_SELF 0x001
#define MM_F_AVA 0x002
#define MM_F_CIGAR 0x004
#define MM_F_OUT_SAM 0x008
#define MM_F_NO_QUAL 0x010
#define MM_F_OUT_CG 0x020
#define MM_F_OUT_CS 0x040
#define MM_F_SPLICE 0x080
#define MM_F_SPLICE_FOR 0x100
#define MM_F_SPLICE_REV 0x200
#define MM_IDX_MAGIC "MMI\2"