mm2-fast-v2.22 init

build_rmi.sh

@@ -0,0 +1,16 @@
+ref_data=$1
+preset=$2
+
+make clean && make lhash_index=1
+touch temp_read.fastq
+./minimap2  -ax $2 $1 temp_read.fastq >/dev/null      
+
+kv_file=$1"_"$2"_minimizers_key_value_sorted"  
+
+full_path=`readlink -f $kv_file`
+
+cd ./ext/TAL_offline
+make lisa_hash
+./build-lisa-hash-index $full_path
+
+rm ../../temp_read.fastq