fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-09-15 13:07:55 +08:00
Code Issues Packages Projects Releases Wiki Activity

r524: reverted to bwa-mem end bonus

Browse Source 
and reduced the cost of clipping when filtering by identity
This commit is contained in:
Heng Li
2017-10-20 16:57:31 -04:00
parent 15ed0712c2
commit bd04372873
4 changed files with 9 additions and 5 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
map.c
View File

@@ -85,7 +85,7 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
mo->pe_ori = 0<<1|1; // FR
mo->a = 2, mo->b = 8, mo->q = 12, mo->e = 2, mo->q2 = 24, mo->e2 = 1;
mo->zdrop = 100;
mo->end_bonus = 15;
mo->end_bonus = 10;
mo->max_frag_len = 800;
mo->max_gap = 100;
mo->bw = 100;