r741: added --min-occ-floor to improve #107

2026-10-05 07:18:13 +08:00 · 2018-03-12 14:32:27 -04:00
parent ad1beaf255
commit bdc615c1d4
5 changed files with 34 additions and 5 deletions
@@ -126,6 +126,7 @@ typedef struct {
 	int pe_ori, pe_bonus;

 	float mid_occ_frac;  // only used by mm_mapopt_update(); see below
+	int32_t min_mid_occ;
 	int32_t mid_occ;     // ignore seeds with occurrences above this threshold
 	int32_t max_occ;
 	int mini_batch_size; // size of a batch of query bases to process in parallel