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r741: added --min-occ-floor to improve #107

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Heng Li
2018-03-12 14:32:27 -04:00
parent ad1beaf255
commit bdc615c1d4
5 changed files with 34 additions and 5 deletions
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python/cmappy.pxd
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@@ -34,6 +34,7 @@ cdef extern from "minimap.h":
float max_clip_ratio
int pe_ori, pe_bonus
float mid_occ_frac
int32_t min_mid_occ
int32_t mid_occ
int32_t max_occ
int mini_batch_size