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make multi

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Saurabh
2021-11-27 10:42:22 -05:00
committed by Heng Li
parent 03540c47b3
commit bedd87f61f
4 changed files with 35 additions and 8 deletions
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map.c
+11 -1
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@@ -9,9 +9,13 @@
#include "mmpriv.h"
#include "bseq.h"
#include "khash.h"
#include <x86intrin.h>
#ifdef MANUAL_PROFILING
extern uint64_t minimizer_lookup_time;
extern uint64_t rmq_time;
#endif
struct mm_tbuf_s {
void *km;
int rep_len, frag_gap;
@@ -175,6 +179,9 @@ static mm128_t *collect_seed_hits_heap(void *km, const mm_mapopt_t *opt, int max
static mm128_t *collect_seed_hits(void *km, const mm_mapopt_t *opt, int max_occ, const mm_idx_t *mi, const char *qname, const mm128_v *mv, int qlen, int64_t *n_a, int *rep_len,
int *n_mini_pos, uint64_t **mini_pos)
{
#ifdef MANUAL_PROFILING
uint64_t lookup_start = __rdtsc();
#endif
int i, n_m;
mm_seed_t *m;
mm128_t *a;
@@ -207,6 +214,9 @@ static mm128_t *collect_seed_hits(void *km, const mm_mapopt_t *opt, int max_occ,
}
kfree(km, m);
radix_sort_128x(a, a + (*n_a));
#ifdef MANUAL_PROFILING
minimizer_lookup_time += __rdtsc() - lookup_start;
#endif
return a;
}