fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-04 22:38:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

r1060: safer ways to use -rNUM1,NUM2

Browse Source
This commit is contained in:
Heng Li
2021-05-27 10:55:13 -04:00
parent 4f8d1bc360
commit ca19463268
4 changed files with 24 additions and 18 deletions
Download Patch File Download Diff File Expand all files Collapse all files
minimap2.1
+6 -3
View File
@@ -165,9 +165,12 @@ Stop chain enlongation if there are no minimizers within
.IR NUM -bp
[10k].
.TP
.BI -r \ NUM
Bandwidth used in chaining and DP-based alignment [500,20k]. This option
approximately controls the maximum gap size.
.BI -r \ NUM1 [, NUM2 ]
Bandwidth for chaining and base alignment [500,20k].
.I NUM1
is used for initial chaining and alignment extension;
.I NUM2
for RMQ-based re-chaining and closing gaps in alignments.
.TP
.BI -n \ INT
Discard chains consisting of