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compute mapq; not working for z-split yet

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Heng Li
2017-06-29 17:52:48 -04:00
parent 337c2a21cd
commit cc67f1b781
2 changed files with 13 additions and 0 deletions
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align.c
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@@ -35,6 +35,7 @@ static void mm_reg_split(mm_reg1_t *r, mm_reg1_t *r2, int n, int qlen, mm128_t *
r2->cnt = r->cnt - n;
r2->score = (int32_t)(r->score * ((float)r2->cnt / r->cnt) + .499);
r2->as = r->as + n;
r2->parent = -2;
mm_reg_set_coor(r2, qlen, a);
r->cnt -= r2->cnt;
r->score -= r2->score;