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added a new Makefile for simde

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Heng Li
2020-04-25 22:43:29 -04:00
parent 66db9da7d8
commit ccb0f7b05d
3 changed files with 110 additions and 38 deletions
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README.md
+8 -4
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@@ -80,11 +80,14 @@ directory to compile. If you see compilation errors, try `make sse2only=1`
to disable SSE4 code, which will make minimap2 slightly slower.
Minimap2 also works with ARM CPUs supporting the NEON instruction sets. To
compile for 32 bit ARM architectures (such as ARMv7), use `make arm_neon=1`. To compile for for 64 bit ARM architectures (such as ARMv8), use `make arm_neon=1 aarch64=1`.
compile for 32 bit ARM architectures (such as ARMv7), use `make arm_neon=1`. To
compile for for 64 bit ARM architectures (such as ARMv8), use `make arm_neon=1
aarch64=1`.
Minimap2 can use [SIMD Everywhere (SIMDe)](https://github.com/nemequ/simde) library for porting implementation
to the different SIMD instruction sets. To compile using SIMDe, use `make simde=1`. To compile for ARM CPUs, add `simde=1` to the commands given above.
SIMDe also enables non-SIMD implementation using `make no_simd=1`.
Minimap2 can use [SIMD Everywhere (SIMDe)][simde] library for porting
implementation to the different SIMD instruction sets. To compile using SIMDe,
use `make -f Makefile.simde`. To compile for ARM CPUs, use `Makefile.simde`
with the ARM related command lines given above.
### <a name="general"></a>General usage
@@ -380,3 +383,4 @@ mappy` or [from BioConda][mappyconda] via `conda install -c bioconda mappy`.
[manpage]: https://lh3.github.io/minimap2/minimap2.html
[manpage-cs]: https://lh3.github.io/minimap2/minimap2.html#10
[doi]: https://doi.org/10.1093/bioinformatics/bty191
[smide]: https://github.com/nemequ/simde