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r237: fixed a bug in outputting cs:Z

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Heng Li
2017-07-31 14:49:39 -04:00
parent 35f232c3fa
commit cd105b47f2
2 changed files with 2 additions and 1 deletions
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format.c
+1
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@@ -85,6 +85,7 @@ static void write_cs(void *km, kstring_t *s, const mm_idx_t *mi, const mm_bseq1_
if (l_tmp > 0) {
tmp[l_tmp] = 0;
mm_sprintf_lite(s, "=%s", tmp);
l_tmp = 0;
}
mm_sprintf_lite(s, "*%c%c", "acgtn"[tseq[t_off + j]], "acgtn"[qseq[q_off + j]]);
} else tmp[l_tmp++] = "ACGTN"[qseq[q_off + j]];