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r545: removed option -i, not working well

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Heng Li
2017-10-31 22:23:27 -04:00
parent b8e758df0f
commit cd24dc8834
6 changed files with 3 additions and 58 deletions
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3
map.c
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@@ -360,9 +360,6 @@ void mm_map_frag(const mm_idx_t *mi, int n_segs, const int *qlens, const char **
if (n_segs == 2 && opt->pe_ori >= 0 && (opt->flag&MM_F_CIGAR))
mm_pair(b->km, max_chain_gap_ref, opt->pe_bonus, opt->a * 2 + opt->b, opt->a, qlens, n_regs, regs); // pairing
}
if (opt->min_iden > 0.0f)
for (i = 0; i < n_segs; ++i)
mm_filter_by_identity(b->km, n_regs[i], regs[i], opt->min_iden, qlens[i], quals[i]);
kfree(b->km, a);
kfree(b->km, u);