fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-09-29 16:38:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

r545: removed option -i, not working well

Browse Source
This commit is contained in:
Heng Li
2017-10-31 22:23:27 -04:00
parent b8e758df0f
commit cd24dc8834
6 changed files with 3 additions and 58 deletions
Download Patch File Download Diff File Expand all files Collapse all files
minimap.h
-3
View File
@@ -59,8 +59,6 @@ typedef struct {
int32_t dp_score, dp_max, dp_max2; // DP score; score of the max-scoring segment; score of the best alternate mappings
uint32_t n_ambi:30, trans_strand:2; // number of ambiguous bases; transcript strand: 0 for unknown, 1 for +, 2 for -
uint32_t n_cigar; // number of cigar operations in cigar[]
float n_diff2;
uint32_t blen2;
uint32_t cigar[];
} mm_extra_t;
@@ -101,7 +99,6 @@ typedef struct {
float mask_level;
float pri_ratio;
int best_n; // top best_n chains are subjected to DP alignment
float min_iden;
int max_join_long, max_join_short;
int min_join_flank_sc;