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r987: position on for strand wrongly outputted

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Heng Li
2020-04-22 10:31:25 -04:00
parent 9c0e2c67f8
commit cd2b19035b
2 changed files with 2 additions and 2 deletions
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format.c
+1 -1
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@@ -323,7 +323,7 @@ void mm_write_paf3(kstring_t *s, const mm_idx_t *mi, const mm_bseq1_t *t, const
if (mi->seq[r->rid].name) mm_sprintf_lite(s, "%s", mi->seq[r->rid].name); if (mi->seq[r->rid].name) mm_sprintf_lite(s, "%s", mi->seq[r->rid].name);
else mm_sprintf_lite(s, "%d", r->rid); else mm_sprintf_lite(s, "%d", r->rid);
mm_sprintf_lite(s, "\t%d", mi->seq[r->rid].len); mm_sprintf_lite(s, "\t%d", mi->seq[r->rid].len);
if (opt_flag & MM_F_QSTRAND) if ((opt_flag & MM_F_QSTRAND) && r->rev)
mm_sprintf_lite(s, "\t%d\t%d", mi->seq[r->rid].len - r->re, mi->seq[r->rid].len - r->rs); mm_sprintf_lite(s, "\t%d\t%d", mi->seq[r->rid].len - r->re, mi->seq[r->rid].len - r->rs);
else else
mm_sprintf_lite(s, "\t%d\t%d", r->rs, r->re); mm_sprintf_lite(s, "\t%d\t%d", r->rs, r->re);
main.c
+1 -1
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@@ -7,7 +7,7 @@
#include "mmpriv.h" #include "mmpriv.h"
#include "ketopt.h" #include "ketopt.h"
#define MM_VERSION "2.17-r986-qs-dirty" #define MM_VERSION "2.17-r987-qs-dirty"
#ifdef __linux__ #ifdef __linux__
#include <sys/resource.h> #include <sys/resource.h>