fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-04 17:58:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

r172: separated PacBio and ONT read overlapping

Browse Source 
HPC k-mer works better for PacBio, but worse for ONT. Interesting...
This commit is contained in:
Heng Li
2017-07-11 15:12:35 -04:00
parent 7598809577
commit cfa083a98b
2 changed files with 15 additions and 7 deletions
Download Patch File Download Diff File Expand all files Collapse all files
minimap2.1
+7 -4
View File
@@ -1,4 +1,4 @@
.TH minimap2 1 "8 July 2017" "minimap2-2.0-r160-pre" "Bioinformatics tools"
.TH minimap2 1 "11 July 2017" "minimap2-2.0-r172-pre" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@@ -54,7 +54,7 @@ minimap2
.RS 4
minimap2
.B -x
ava10k
ava-ont
.RB [ -t
.IR nThreads ]
.I target.fa
@@ -180,8 +180,11 @@ Available
are:
.RS
.TP 8
.B ava10k
PacBio/Oxford Nanopore all-vs-all overlap mapping (-Hk19 -w5 -Xp0 -m100 -D.05)
.B ava-pb
PacBio all-vs-all overlap mapping (-Hk19 -w5 -Xp0 -m100 -D.05 -g10000)
.TP 8
.B ava-ont
Oxford Nanopore all-vs-all overlap mapping (-k15 -w5 -Xp0 -m100 -D.05 -g10000)
.TP
.B map10k
PacBio/Oxford Nanopore read to reference mapping (-Hk19)