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r227: use local alignment for INV alignment

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Heng Li
2017-07-29 17:40:53 -04:00
parent da3db3c095
commit d08b7a0c51
5 changed files with 179 additions and 21 deletions
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2
Makefile
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@@ -2,7 +2,7 @@ CC= gcc
CFLAGS= -g -Wall -O2 -Wc++-compat
CPPFLAGS= -DHAVE_KALLOC
INCLUDES= -I.
OBJS= kthread.o kalloc.o ksw2_extz2_sse.o ksw2_extd2_sse.o misc.o bseq.o \
OBJS= kthread.o kalloc.o ksw2_extz2_sse.o ksw2_extd2_sse.o ksw2_ll_sse.o misc.o bseq.o \
sketch.o sdust.o index.o chain.o align.o hit.o map.o format.o
PROG= minimap2
PROG_EXTRA= sdust minimap2-lite