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r120: use max-scoring seg to control output

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much better now
This commit is contained in:
Heng Li
2017-06-30 14:21:44 -04:00
parent 08a61c3cfc
commit d11049eb32
5 changed files with 38 additions and 29 deletions
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format.c
+1 -1
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@@ -60,7 +60,7 @@ static inline void write_tags(kstring_t *s, const mm_reg1_t *r)
if (r->p) mm_sprintf_lite(s, "\ts1:i:%d", r->score);
if (r->parent == r->id) mm_sprintf_lite(s, "\ts2:i:%d", r->subsc);
if (r->split) mm_sprintf_lite(s, "\tzd:i:%d", r->split);
if (r->p) mm_sprintf_lite(s, "\tNM:i:%d\tAS:i:%d\tnn:i:%d", r->p->n_diff, r->p->score, r->p->n_ambi);
if (r->p) mm_sprintf_lite(s, "\tNM:i:%d\tms:i:%d\tAS:i:%d\tnn:i:%d", r->p->n_diff, r->p->dp_max, r->p->dp_score, r->p->n_ambi);
}
void mm_write_paf(kstring_t *s, const mm_idx_t *mi, const bseq1_t *t, const mm_reg1_t *r)