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r120: use max-scoring seg to control output

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much better now
This commit is contained in:
Heng Li
2017-06-30 14:21:44 -04:00
parent 08a61c3cfc
commit d11049eb32
5 changed files with 38 additions and 29 deletions
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minimap.h
+2 -2
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@@ -45,7 +45,7 @@ typedef struct {
typedef struct {
uint32_t capacity;
int32_t score;
int32_t dp_score, dp_max;
uint32_t blen;
uint32_t n_diff, n_ambi;
uint32_t n_cigar;
@@ -84,7 +84,7 @@ typedef struct {
int a, b, q, e; // matching score, mismatch, gap-open and gap-ext penalties
int zdrop;
int min_dp_score;
int min_dp_max;
int min_ksw_len;
int max_occ;