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Heng Li
2017-06-29 12:58:52 -04:00
parent c8d122bcdb
commit d274e1b743
7 changed files with 71 additions and 13 deletions
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chain.c
+1 -1
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@@ -35,7 +35,7 @@ int mm_chain_dp(int max_dist, int bw, int max_skip, int min_cnt, int min_sc, int
// fill the score and backtrack arrays
for (i = 0; i < n; ++i) {
uint64_t ri = a[i].x;
int32_t qi = (int32_t)a[i].y, q_span = a[i].y>>32;
int32_t qi = (int32_t)a[i].y, q_span = a[i].y>>32&0xff; // NB: only 8 bits of span is used!!!
int32_t max_f = -INT32_MAX, max_j = -1, n_skip = 0;
while (st < i && ri - a[st].x > max_dist) ++st;
for (j = i - 1; j >= st; --j) {