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Heng Li
2017-06-29 12:58:52 -04:00
parent c8d122bcdb
commit d274e1b743
7 changed files with 71 additions and 13 deletions
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ksw2.h
+5 -4
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@@ -8,10 +8,11 @@
#define KSW_EZ_SCORE_ONLY 0x01 // don't record alignment path/cigar
#define KSW_EZ_RIGHT 0x02 // right-align gaps
#define KSW_EZ_GENERIC_SC 0x04 // without this flag: match/mismatch only; last symbol is a wildcard
#define KSW_EZ_APPROX_MAX 0x08 // approximate max and Z-drop; this is faster
#define KSW_EZ_DYN_BAND 0x10 // once used, ksw_extz_t::{mqe,mte} may be wrong
#define KSW_EZ_EXTZ_ONLY 0x20 // only perform extension
#define KSW_EZ_REV_CIGAR 0x40 // reverse CIGAR in the output
#define KSW_EZ_APPROX_MAX 0x08 // approximate max; this is faster with sse
#define KSW_EZ_APPROX_DROP 0x10 // approximate Z-drop; faster with sse
#define KSW_EZ_DYN_BAND 0x20 // once used, ksw_extz_t::{mqe,mte} may be wrong
#define KSW_EZ_EXTZ_ONLY 0x40 // only perform extension
#define KSW_EZ_REV_CIGAR 0x80 // reverse CIGAR in the output
typedef struct {
uint32_t max:31, zdropped:1;