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r968: allow large mini_batch; resolves #491

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Heng Li
2020-01-18 12:24:44 -05:00
parent 24f50f38e8
commit d2e14705e7
6 changed files with 19 additions and 17 deletions
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4
python/cmappy.pxd
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@@ -6,7 +6,7 @@ cdef extern from "minimap.h":
#
ctypedef struct mm_idxopt_t:
short k, w, flag, bucket_bits
int mini_batch_size
int64_t mini_batch_size
uint64_t batch_size
ctypedef struct mm_mapopt_t:
@@ -42,7 +42,7 @@ cdef extern from "minimap.h":
int32_t min_mid_occ
int32_t mid_occ
int32_t max_occ
int mini_batch_size
int64_t mini_batch_size
int64_t max_sw_mat
const char *split_prefix